An introduction to Nextflow, a tool to enable scalable and reproducible workflows.
This documentation remains for reference but official training material is now recommended at Nextflow training
Prerequisites
Knowledge of Linux and Python essential. The “Supercomputing for Beginners” course would be recommended.
| Setup | Download files required for the lesson | |
| 00:00 | 1. Introduction | How can I make my results easier to reproduce? |
| 00:30 | 2. The basics | How do I write a simple workflow? |
| 01:00 | 3. Processes and channels | How do I pass information from processes? |
| 01:40 | 4. Advanced configuration | What functionality and modularity to Nextflow? |
| 02:00 | 5. Running on cluster | What configuration should I use to run on a cluster? |
| 02:30 | 6. Singularity | How can I quickly reproduce or share my pipelines? |
| 03:00 | 7. Wrapping up and where to go | Where do I go now? |
| 03:30 | Finish |
The actual schedule may vary slightly depending on the topics and exercises chosen by the instructor.